Metagenomics Reveal Correlations Between Microbial Organisms in Soils and the Health of Populus euphratica.
Identifieur interne : 000273 ( Main/Exploration ); précédent : 000272; suivant : 000274Metagenomics Reveal Correlations Between Microbial Organisms in Soils and the Health of Populus euphratica.
Auteurs : Yu Tuo [République populaire de Chine] ; Zhibao Dong [République populaire de Chine] ; Xiping Wang [République populaire de Chine] ; Beibei Gao [République populaire de Chine] ; Chunming Zhu [République populaire de Chine] ; Fei Tuo [République populaire de Chine]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
Biological diversity plays an important role in the stability of ecosystems. The Mu Us Desert (MUD), located in Northern China, is an aeolian desert. Although it has been governed by a series of ecological restoration programs, the MUD still has limited biological diversity. Populus euphratica (P. euphratica), a xerophytic plant, has great potential to improve the biological diversity of the MUD. However, the survival rate of P. euphratica in the MUD has been very low. The current study tried to explore the mechanism of the high death rate of P. euphratica in the microbiome perspective. The correlation study between soil community composition and soil properties showed that water-filled pore space (WFPS), pH, EC, AP, NO3-, and NH4+ possess higher potential to change the bacterial community (18%) than the fungal community (9%). Principal coordinate analysis indicated that the composition of both bacteria (Proteobacteria and Bacteroidetes) and fungi (Ascomycota) in the root soil can be increased by P. euphratica. By systematically comparing between the fungal diversity in the root soil around P. euphratica and the pathogenic fungus extract from the pathogenic site of P. euphratica, we found that the high death rate of P. euphratica was associated with specific pathogenic fungus Alternaria alternate and Didymella glomerata. In addition, the microbiome composition analysis indicated that P. euphratica planting could also influence the portions of bacteria community, which also has great potential to lead to future infection. However, as the extraction and separation of bacteria from plants is challenging, the correlation between pathogenic bacteria and the high death rate of P. euphratica was not studied here and could be explored in future work.
DOI: 10.3389/fmicb.2020.02095
PubMed: 33013765
PubMed Central: PMC7506035
Affiliations:
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Correlations Between Microbial Organisms in Soils and the Health of <i>Populus euphratica</i>.</title><author><name sortKey="Tuo, Yu" sort="Tuo, Yu" uniqKey="Tuo Y" first="Yu" last="Tuo">Yu Tuo</name><affiliation wicri:level="1"><nlm:affiliation>School of Geography and Tourism, Shaanxi Normal University, Xi'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Geography and Tourism, Shaanxi Normal University, Xi'an</wicri:regionArea><wicri:noRegion>Xi'an</wicri:noRegion></affiliation></author><author><name sortKey="Dong, Zhibao" sort="Dong, Zhibao" uniqKey="Dong Z" first="Zhibao" last="Dong">Zhibao Dong</name><affiliation wicri:level="1"><nlm:affiliation>School of Geography and Tourism, Shaanxi Normal University, Xi'an, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Geography and Tourism, Shaanxi Normal University, 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City, Yulin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Greening Committee Office of Forestry Bureau of Yulin City, Yulin</wicri:regionArea><wicri:noRegion>Yulin</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Biological diversity plays an important role in the stability of ecosystems. The Mu Us Desert (MUD), located in Northern China, is an aeolian desert. Although it has been governed by a series of ecological restoration programs, the MUD still has limited biological diversity. <i>Populus euphratica</i> (<i>P. euphratica</i>), a xerophytic plant, has great potential to improve the biological diversity of the MUD. However, the survival rate of <i>P. euphratica</i> in the MUD has been very low. The current study tried to explore the mechanism of the high death rate of <i>P. euphratica</i> in the microbiome perspective. The correlation study between soil community composition and soil properties showed that water-filled pore space (WFPS), pH, EC, AP, NO<sub>3</sub><sup>-</sup>, and NH<sub>4</sub><sup>+</sup> possess higher potential to change the bacterial community (18%) than the fungal community (9%). Principal coordinate analysis indicated that the composition of both bacteria (<i>Proteobacteria</i> and <i>Bacteroidetes</i>) and fungi (<i>Ascomycota</i>) in the root soil can be increased by <i>P. euphratica</i>. By systematically comparing between the fungal diversity in the root soil around <i>P. euphratica</i> and the pathogenic fungus extract from the pathogenic site of <i>P. euphratica</i>, we found that the high death rate of <i>P. euphratica</i> was associated with specific pathogenic fungus <i>Alternaria alternate</i> and <i>Didymella glomerata</i>. In addition, the microbiome composition analysis indicated that <i>P. euphratica</i> planting could also influence the portions of bacteria community, which also has great potential to lead to future infection. However, as the extraction and separation of bacteria from plants is challenging, the correlation between pathogenic bacteria and the high death rate of <i>P. euphratica</i> was not studied here and could be explored in future work.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">33013765</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>06</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Metagenomics Reveal Correlations Between Microbial Organisms in Soils and the Health of <i>Populus euphratica</i>.</ArticleTitle><Pagination><MedlinePgn>2095</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.02095</ELocationID><Abstract><AbstractText>Biological diversity plays an important role in the stability of ecosystems. The Mu Us Desert (MUD), located in Northern China, is an aeolian desert. Although it has been governed by a series of ecological restoration programs, the MUD still has limited biological diversity. <i>Populus euphratica</i> (<i>P. euphratica</i>), a xerophytic plant, has great potential to improve the biological diversity of the MUD. However, the survival rate of <i>P. euphratica</i> in the MUD has been very low. The current study tried to explore the mechanism of the high death rate of <i>P. euphratica</i> in the microbiome perspective. The correlation study between soil community composition and soil properties showed that water-filled pore space (WFPS), pH, EC, AP, NO<sub>3</sub><sup>-</sup>, and NH<sub>4</sub><sup>+</sup> possess higher potential to change the bacterial community (18%) than the fungal community (9%). Principal coordinate analysis indicated that the composition of both bacteria (<i>Proteobacteria</i> and <i>Bacteroidetes</i>) and fungi (<i>Ascomycota</i>) in the root soil can be increased by <i>P. euphratica</i>. By systematically comparing between the fungal diversity in the root soil around <i>P. euphratica</i> and the pathogenic fungus extract from the pathogenic site of <i>P. euphratica</i>, we found that the high death rate of <i>P. euphratica</i> was associated with specific pathogenic fungus <i>Alternaria alternate</i> and <i>Didymella glomerata</i>. In addition, the microbiome composition analysis indicated that <i>P. euphratica</i> planting could also influence the portions of bacteria community, which also has great potential to lead to future infection. However, as the extraction and separation of bacteria from plants is challenging, the correlation between pathogenic bacteria and the high death rate of <i>P. euphratica</i> was not studied here and could be explored in future work.</AbstractText><CopyrightInformation>Copyright © 2020 Tuo, Dong, Wang, Gao, Zhu and Tuo.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tuo</LastName><ForeName>Yu</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Geography and Tourism, Shaanxi Normal University, Xi'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dong</LastName><ForeName>Zhibao</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>School of Geography and Tourism, Shaanxi Normal University, Xi'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xiping</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Horticulture, Northwest A&F University, Yangling, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Beibei</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Pesticide Science, College of Plant Protection, Nanjing Agricultural University, State and Local Joint Engineering Research Center of Green Pesticide Invention and Application, Nanjing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Chunming</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>School of Geography and Tourism, Shaanxi Normal University, Xi'an, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tuo</LastName><ForeName>Fei</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Greening Committee Office of Forestry Bureau of Yulin City, Yulin, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Mu Us Desert</Keyword><Keyword MajorTopicYN="N">Populus euphratica</Keyword><Keyword MajorTopicYN="N">biological diversity</Keyword><Keyword MajorTopicYN="N">microbial communities</Keyword><Keyword MajorTopicYN="N">pathogen</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>12</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>08</Month><Day>10</Day></PubMedPubDate><PubMedPubDate 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